DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and loxl3a

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001186799.1 Gene:loxl3a / 568839 ZFINID:ZDB-GENE-070818-2 Length:791 Species:Danio rerio


Alignment Length:490 Identity:195/490 - (39%)
Similarity:272/490 - (55%) Gaps:55/490 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 IRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRFWM 125
            :||.||....||.:|||...:||.||||.|:...|.:|||:|||...:........|......:|
Zfish   293 MRLKGGARAGEGRVEVLKGSEWGTVCDDHWNLQSASVVCRELGFGTAKEALTGARMGQGMGPIYM 357

  Fly   126 DNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPP--------------------ENALIPM 170
            :.:.|.|.|:.|.||..:.....||:..|.|.|:|..|                    ...|:|.
Zfish   358 NEVQCGGDEKSLWDCPHQSITAEDCKHTEDASVICNIPYMGFEKLMRLTGGRTRLEGRVELLLPA 422

  Fly   171 -------------------ATPIIRDEDLPKYPIHSRSRLYVRLRGGRSRIEGRVEVSLDGGRWG 216
                               |..:.|...|.    |:.|.|.:|:.|||:..|||:||.: ..|||
Zfish   423 GGGVRDWGLICGDGWTSREAMVVCRQLGLG----HASSGLRIRMVGGRTDHEGRLEVQI-SSRWG 482

  Fly   217 SVCADGWSLLEANVVCRQLGLGYASEAF-QTDFFGGFNVSRPVLSGSECYGNETELADCLHHDAS 280
            ::|:|.|:..||.|.||||||.|...|. :|.::...||:..|:||.:|.|:|..|.||.||   
Zfish   483 TICSDNWTTREAMVACRQLGLKYCLHAITETWYWDSSNVTEMVMSGVKCKGDEMTLTDCQHH--- 544

  Fly   281 QGIISC-HGNRQHVAAVICDYIAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQR 344
             .::|| ....|..|.|||..:|.|||::...:|||.::||||:.|:.||.||||:|..|.|.. 
Zfish   545 -SVVSCKRAGAQFSAGVICSDMASDLVLNAPLVEQTVYIEDRPLHLLYCAAEENCLAKSAAQAS- 607

  Fly   345 DDPHWRYRSRRLLKFTAAAINAGNADFRPFKEKSQWEWHMCHMHFHSMEVFATFDIFNLRGIKVA 409
                |.|..||||:|::...|.|.|||||...:..|.||.||.|:|||::|..:|:.:|.|.|||
Zfish   608 ----WPYGHRRLLRFSSEIHNIGKADFRPRLGRHSWVWHECHRHYHSMDIFTYYDLLSLNGTKVA 668

  Fly   410 QGHKASFCLEDSNCLPGVAKKYNCANYGDQGISINCSDVYLYNLDCQWVDVTDLIPGTYVLKIAI 474
            .||||||||||:.|..||:|:|.|||:|:|||::.|.|:|.:::||||:|:||:.||.|:|::.|
Zfish   669 DGHKASFCLEDTECHEGVSKRYECANFGEQGITVGCWDLYRHDIDCQWIDITDVSPGNYILQVII 733

  Fly   475 NPEFKVAEMNYDNNAAICDLIYTANFARVQNCQLG 509
            ||.|:|||.::.|||..|:..|..:...:..|.||
Zfish   734 NPNFEVAESDFTNNAMRCNCKYDGHRVWLHKCHLG 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 36/99 (36%)
SRCR 66..160 CDD:278931 33/93 (35%)
SR 193..298 CDD:214555 45/106 (42%)
SRCR 198..298 CDD:278931 43/101 (43%)
Lysyl_oxidase 303..503 CDD:279521 98/199 (49%)
loxl3aNP_001186799.1 SR 39..138 CDD:214555
SRCR 47..139 CDD:278931
SR 179..271 CDD:214555
SRCR 181..271 CDD:278931
SR 293..393 CDD:214555 36/99 (36%)
SRCR 298..393 CDD:278931 33/94 (35%)
SR 460..563 CDD:214555 46/107 (43%)
SRCR 465..563 CDD:278931 44/102 (43%)
Lysyl_oxidase 568..762 CDD:279521 98/198 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 229 1.000 Domainoid score I2401
eggNOG 1 0.900 - - E1_28KG1
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 387 1.000 Inparanoid score I1964
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D376277at33208
OrthoFinder 1 1.000 - - FOG0000389
OrthoInspector 1 1.000 - - otm25165
orthoMCL 1 0.900 - - OOG6_104333
Panther 1 1.100 - - O PTHR45817
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5813
SonicParanoid 1 1.000 - - X896
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

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