DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Loxl2 and lgals3bp.2

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001017658.1 Gene:lgals3bp.2 / 550351 ZFINID:ZDB-GENE-050417-143 Length:561 Species:Danio rerio


Alignment Length:141 Identity:59/141 - (41%)
Similarity:79/141 - (56%) Gaps:18/141 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 TLLAIHMADAVVQHRSLEDARQERQRLVHRYTKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGA 84
            |.|.||::   .|..:|.|.:              :|.:|.:|||||.:. .|.:||.|:|:||.
Zfish     8 TFLLIHVS---AQRWTLFDEQ--------------SKPKGVLRLVGGLSS-SGRVEVYHDGQWGT 54

  Fly    85 VCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRFWMDNLFCEGHEQELVDCHFEGWGEND 149
            ||||.||..||.:|||||||||.......|.:|......|:|::.|:|.|..|.:|.|:|||.||
Zfish    55 VCDDGWDLAEAQVVCRQLGFPGAVSVVSGGQYGEGSGPIWLDDMMCKGSESILSECSFKGWGVND 119

  Fly   150 CEPGEAAGVVC 160
            |...|.|||:|
Zfish   120 CTHKEDAGVIC 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 50/100 (50%)
SRCR 66..160 CDD:278931 45/93 (48%)
SR 193..298 CDD:214555
SRCR 198..298 CDD:278931
Lysyl_oxidase 303..503 CDD:279521
lgals3bp.2NP_001017658.1 SR 32..130 CDD:214555 49/98 (50%)
SRCR 36..131 CDD:278931 47/96 (49%)
PHA03098 183..>495 CDD:222983
BACK 271..368 CDD:197943
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 111 1.000 Domainoid score I6174
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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