DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and MSR1

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001350673.1 Gene:MSR1 / 4481 HGNCID:7376 Length:469 Species:Homo sapiens


Alignment Length:111 Identity:43/111 - (38%)
Similarity:62/111 - (55%) Gaps:8/111 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YTKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSG 114
            :|||        |||||...:||.:|:||:|:||.:|||.|:.....:|||.||:||::...::.
Human   365 FTKV--------RLVGGSGPHEGRVEILHSGQWGTICDDRWEVRVGQVVCRSLGYPGVQAVHKAA 421

  Fly   115 FFGPARRRFWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVC 160
            .||......|::.:||.|.|..:.:|....||...|...|.|||.|
Human   422 HFGQGTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTC 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 40/100 (40%)
SRCR 66..160 CDD:278931 35/93 (38%)
SR 193..298 CDD:214555
SRCR 198..298 CDD:278931
Lysyl_oxidase 303..503 CDD:279521
MSR1NP_001350673.1 AAA_13 <122..>287 CDD:331073
Macscav_rec 139..187 CDD:308889
Collagen <298..352 CDD:189968
SR 368..468 CDD:214555 41/108 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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