DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and loxl3b

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_005156601.1 Gene:loxl3b / 336266 ZFINID:ZDB-GENE-030131-8210 Length:849 Species:Danio rerio


Alignment Length:494 Identity:188/494 - (38%)
Similarity:274/494 - (55%) Gaps:65/494 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRFWMD 126
            ||.||....||.:|||...:||.||||.|:...|.:|||::||...:........|.......|:
Zfish   352 RLKGGAKYGEGRVEVLKGSEWGTVCDDRWNLVSASVVCREMGFGSAKEALTGASMGKGLGPIHMN 416

  Fly   127 NLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPP---------------------------- 163
            .:.|.|:|:.|..|.::.....||:..|.|.|.|..|                            
Zfish   417 EVQCTGNERSLWSCRYKNITAEDCKHTEDASVRCNVPYMGYEKTVRILGGRTRYEGRVEVLHREA 481

  Fly   164 ----------------ENALIPMATPIIRDEDLPKYPIHSRSRLYVRLRGGRSRIEGRVEVSLDG 212
                            :.|::     :.|...| .|..|.   |.|||.||||..||||||.: |
Zfish   482 DGTLRWGLICGEGWGTQEAMV-----LCRQLGL-GYANHG---LQVRLSGGRSPYEGRVEVRV-G 536

  Fly   213 GRWGSVCADGWSLLEANVVCRQLGLGYASEAF-QTDFFGGFNVSRPVLSGSECYGNETELADCLH 276
            .||||||::|||..||.|:|||||||::..|. :|.::...||:..|:||.:|.|:|..::.|.|
Zfish   537 QRWGSVCSEGWSTKEAMVLCRQLGLGFSMHAITETWYWDSSNVTDMVMSGVKCTGDEMSISQCQH 601

  Fly   277 HDASQGIISCH-GNRQHVAAVICDYIAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAY 340
            |..    ::|. ...:..|.|||...|.|||::...::||.::||||:.::.||.||:|::..| 
Zfish   602 HRT----VNCQKAAARFAAGVICSETASDLVLNAPLVQQTTYIEDRPLHMLYCAAEEDCLSKSA- 661

  Fly   341 QIQRDDPHWRYRSRRLLKFTAAAINAGNADFRPFKEKSQWEWHMCHMHFHSMEVFATFDIFNLRG 405
                ...:|.|..||||:|::...|.|.|||||...:..|.||.||.|:|||::|..:|:.:..|
Zfish   662 ----ASANWPYGHRRLLRFSSQIHNIGRADFRPKAGRHSWVWHACHGHYHSMDIFTHYDLMSANG 722

  Fly   406 IKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQGISINCSDVYLYNLDCQWVDVTDLIPGTYVL 470
            .|||:||||||||||::|..||:|:|.|||:|:|||::.|.|:|.:::||||:|:||:.||.|:|
Zfish   723 TKVAEGHKASFCLEDTDCDEGVSKRYKCANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGNYIL 787

  Fly   471 KIAINPEFKVAEMNYDNNAAICDLIYTANFARVQNCQLG 509
            ::.|||.::|:|.::.|||..|:..|..:...|.||.:|
Zfish   788 QVVINPNYEVSESDFTNNAMKCNCKYDGHRIWVHNCHIG 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 34/98 (35%)
SRCR 66..160 CDD:278931 31/93 (33%)
SR 193..298 CDD:214555 49/106 (46%)
SRCR 198..298 CDD:278931 45/101 (45%)
Lysyl_oxidase 303..503 CDD:279521 90/199 (45%)
loxl3bXP_005156601.1 SR 50..149 CDD:214555
SRCR 58..150 CDD:278931
SR 190..329 CDD:214555
SRCR 192..329 CDD:278931
SR 352..451 CDD:214555 34/98 (35%)
SRCR 356..451 CDD:278931 31/94 (33%)
SR 518..621 CDD:214555 50/107 (47%)
SRCR 523..621 CDD:278931 46/102 (45%)
Lysyl_oxidase 626..820 CDD:279521 90/198 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 229 1.000 Domainoid score I2401
eggNOG 1 0.900 - - E1_28KG1
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 387 1.000 Inparanoid score I1964
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D376277at33208
OrthoFinder 1 1.000 - - FOG0000389
OrthoInspector 1 1.000 - - otm25165
orthoMCL 1 0.900 - - OOG6_104333
Panther 1 1.100 - - LDO PTHR45817
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5813
SonicParanoid 1 1.000 - - X896
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.900

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