DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and Cd163

DIOPT Version :10

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_006237414.1 Gene:Cd163 / 312701 RGDID:1310382 Length:1151 Species:Rattus norvegicus


Alignment Length:354 Identity:101/354 - (28%)
Similarity:138/354 - (38%) Gaps:109/354 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 GAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRF 123
            |.:|||||.....|.:||.|.|.||.:|||.||.|:|::||:||........|.|.:||......
  Rat   719 GQLRLVGGGGRCAGRVEVYHEGSWGTICDDSWDLTDANVVCKQLDCGVAINATGSAYFGEGTGDI 783

  Fly   124 WMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYP-------------------------- 162
            |:|.:.|.|.|..:..||..|||.::|...|.|||||..                          
  Rat   784 WLDEIDCSGKESHIWQCHSHGWGRHNCRHKEDAGVVCSEFMSLRLTNEAHRVNCTGRLEVFYNGT 848

  Fly   163 -----------------------PENALI-----------PMATPIIRDE-------DLPKYPIH 186
                                   .:|..:           ||.|..::..       ..|..|..
  Rat   849 WGSIGSSNMSPTTVGVVCRQLGCADNGTVKPTSSDKTPTRPMWTDSVQCPKGVDTLWQCPSSPWK 913

  Fly   187 SRSRL-----------YVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYA 240
            .|...           .:||:.|.:...||||: ...|.||:||.|.|.|.:|.|.|:|||.|.|
  Rat   914 QRQASPSQESWIVCDDKIRLQEGHTDCSGRVEI-WHRGSWGTVCDDSWDLNDAEVACKQLGCGQA 977

  Fly   241 SEAFQTDFFG-GFNVSRPV-LSGSECYGNETEL----------ADCLH-HDASQGIISC------ 286
            .||.:...|| |   :.|: |:..:|.|||:.|          :||.| .|||   :.|      
  Rat   978 VEALKEAAFGPG---TGPIWLNEMKCRGNESSLWDCPARPWSHSDCGHKEDAS---VKCLPRMTL 1036

  Fly   287 ---HGNRQH--VAAVICDYIAPDLVVDYL 310
               ||....  .|.::|..|...|::.:|
  Rat  1037 ESQHGTGHSTLTALLVCGAILLVLLIAFL 1065

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 43/99 (43%)
SR 193..298 CDD:214555 45/128 (35%)
Lysyl_oxidase 303..506 CDD:460102 2/8 (25%)
Cd163XP_006237414.1 SR 50..149 CDD:214555
SR 157..258 CDD:214555
SR 265..365 CDD:214555
SR 372..474 CDD:214555
SR 480..579 CDD:214555
SR 584..684 CDD:214555
SR 721..821 CDD:214555 43/99 (43%)
SR 931..1031 CDD:214555 41/106 (39%)
Blue background indicates that the domain is not in the aligned region.

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