DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Loxl2 and Loxl2

DIOPT Version :10

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_038949076.1 Gene:Loxl2 / 290350 RGDID:1308435 Length:823 Species:Rattus norvegicus


Alignment Length:507 Identity:198/507 - (39%)
Similarity:273/507 - (53%) Gaps:83/507 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RYTKVLNKEEG-------AIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGF-- 104
            |:.|....|:.       .:||.||....||.:|||.||:||.||||:||...|.:|||:|||  
  Rat   329 RFRKAYKPEQDHVSLQQPLVRLRGGAQVGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGT 393

  Fly   105 -----PGMR-------RYTR--------------SGF----FGPARRRFWMDNLFCEGHEQELVD 139
                 .|.|       .||.              ||.    .||..    ::.:.|.|.|:.::|
  Rat   394 AKEAVTGSRLGQGIGWEYTEGKHGIPALLLGKASSGSECTGIGPIH----LNEVQCTGTEKSIID 454

  Fly   140 C--HFEGWGENDCEPGEAAGVVCYPPENALIPMATPIIRDEDLPKYPIHSRSRLYVRLRGGRSRI 202
            |  :.|..|   |...|.|||.|                  ::|......:    |||.|||:..
  Rat   455 CKLNTESQG---CNHEEDAGVRC------------------NIPIMGFQKK----VRLNGGRNPY 494

  Fly   203 EGRVEVSLDGGR---WGSVCADGWSLLEANVVCRQLGLGYASEAFQTDFF--GGFNVSRPVLSGS 262
            ||||||..:...   ||:||...|.::||.|||||||||:||.|||..::  |....::.::||.
  Rat   495 EGRVEVLTERNGSLVWGNVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGNIFANKVIMSGV 559

  Fly   263 ECYGNETELADCLHHDASQGIISCHGNRQHVAAVICDYIAPDLVVDYLEIEQTAHLEDRPMLLMQ 327
            :|.|.|..||.|.|   .:.::...|..|:.|.|.|...|||||::...::|||:||||||.|:|
  Rat   560 KCSGTELSLAHCRH---DEEVVCPEGGVQYGAGVACSETAPDLVLNAEIVQQTAYLEDRPMALLQ 621

  Fly   328 CAMEENCVANEAYQIQRDDPHWRYRSRRLLKFTAAAINAGNADFRPFKEKSQWEWHMCHMHFHSM 392
            |||||||::..|........|     ||||:|::...|.|.:||||...:..|.||.||.|:|||
  Rat   622 CAMEENCLSASAVHTDPTRGH-----RRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSM 681

  Fly   393 EVFATFDIFNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQGISINCSDVYLYNLDCQW 457
            |||..:|:.:|.|.|||:||||||||||:.|...:.|.|.|||:|:|||::.|.|:|.:::||||
  Rat   682 EVFTYYDLLSLNGTKVAEGHKASFCLEDTECEGDIQKSYECANFGEQGITMGCWDMYRHDIDCQW 746

  Fly   458 VDVTDLIPGTYVLKIAINPEFKVAEMNYDNNAAICDLIYTANFARVQNCQLG 509
            :|:||:.||.|:.::.|||.::|.|.::.||...|...|......:.||.:|
  Rat   747 IDITDVPPGDYLFQVVINPNYEVPESDFSNNIMKCRSRYDGYRIWMYNCHVG 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 46/133 (35%)
SR 193..298 CDD:214555 47/109 (43%)
Lysyl_oxidase 303..506 CDD:460102 95/202 (47%)
Loxl2XP_038949076.1 SR 73..174 CDD:214555
SR 216..316 CDD:214555
SR 348..475 CDD:214555 45/160 (28%)
SR 485..593 CDD:214555 45/112 (40%)
Lysyl_oxidase 597..795 CDD:460102 91/193 (47%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.