DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and SSC5D

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001138422.1 Gene:SSC5D / 284297 HGNCID:26641 Length:1573 Species:Homo sapiens


Alignment Length:524 Identity:139/524 - (26%)
Similarity:178/524 - (33%) Gaps:192/524 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RQERQRLVHRYTKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGF 104
            ||||                 :|||.|.:...|.:||.|.|:||.||||.||..:|.:.||:||.
Human   194 RQER-----------------LRLVSGPHRCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRELGC 241

  Fly   105 PGMRRYTRSGFFGPARRRFWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPPENALIP 169
            .|.........|||.....|||::.|.|.||.|.||....||.::|:..|.||:||..|...|  
Human   242 GGALAAPGGARFGPGAGPVWMDDVGCGGGEQALRDCPRSPWGRSNCDHSEDAGLVCTGPAPRL-- 304

  Fly   170 MATPIIRDEDLPKYPIHSRSRLYVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQ 234
                                    ||..|.....||:|| ..||||||||.|.|.|.:|.|.||:
Human   305 ------------------------RLADGPHGCAGRLEV-WHGGRWGSVCDDAWDLRDAAVACRE 344

  Fly   235 LGLGYASEAFQTDFFGGFNVSRP-VLSGSECYGNETELADCL-----HHDASQGIISCHGNRQHV 293
            ||.|.|..|....|||  ..|.| :|....|.||||.|..|.     .||       || :|:..
Human   345 LGCGGALAAPGGAFFG--EGSGPIILDDLRCRGNETALRFCPARPWGQHD-------CH-HREDA 399

  Fly   294 AAVICD-----YIAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWRYRS 353
            .|| ||     |:.|....|                      ..|....||            .|
Human   400 GAV-CDGMPLGYVPPTAPTD----------------------SNNSTPREA------------AS 429

  Fly   354 RRLLKFTAAAINAGNADFRPFKEKSQWE-------------------------WH------MCHM 387
            |.....|:.|.........|......||                         ||      :|. 
Human   430 RPPSTMTSQAPGTAGVSPPPASPTVLWEPGPEAGSPQLRLVAGPSKCSGRLEVWHDQRWGTVCD- 493

  Fly   388 HFHSMEVFATFDIFNLRGIKV---------------AQGH----KASFCLEDSNCLPGVAK---- 429
                       |.:::|...|               |.|.    .....|:|..|:...|.    
Human   494 -----------DSWDMRDSAVVCRELGCGGPQQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSDC 547

  Fly   430 ------KYNCANYGDQGISI-------NCSDVYLYNLDCQWV-----DVTDLIPGTYVLKIAINP 476
                  |:|||:..|.|::.       :.||.:.::    |:     |....:||    ::|..|
Human   548 PAAPWGKHNCAHNEDVGVTCTGPPGLDSISDPFSWS----WIPGLGRDRDAWLPG----ELATKP 604

  Fly   477 EFKV 480
            ...|
Human   605 SASV 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 43/99 (43%)
SRCR 66..160 CDD:278931 39/93 (42%)
SR 193..298 CDD:214555 47/110 (43%)
SRCR 198..298 CDD:278931 45/105 (43%)
Lysyl_oxidase 303..503 CDD:279521 39/250 (16%)
SSC5DNP_001138422.1 SR 20..119 CDD:214555
SRCR 25..120 CDD:278931
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 153..192
SR 198..298 CDD:214555 43/99 (43%)
SRCR 203..298 CDD:278931 40/94 (43%)
SR 304..403 CDD:214555 48/136 (35%)
SRCR 309..403 CDD:278931 45/105 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 412..465 12/86 (14%)
SR 467..568 CDD:214555 18/112 (16%)
SRCR 472..568 CDD:278931 18/107 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 614..769
SR 772..872 CDD:214555
SRCR 777..872 CDD:278931
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 895..1475
SOBP <1331..1479 CDD:291927
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1554..1573
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156677
Domainoid 1 1.000 104 1.000 Domainoid score I6689
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.840

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