DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Loxl2 and Prss12

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_032965.1 Gene:Prss12 / 19142 MGIID:1100881 Length:761 Species:Mus musculus


Alignment Length:448 Identity:123/448 - (27%)
Similarity:178/448 - (39%) Gaps:124/448 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 EGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRR 122
            :|.|||.||.:.:||.:||.:.|:||.||||.|......:.||.|||...::.:.:.|.| :.|.
Mouse   270 DGVIRLAGGKSTHEGRLEVYYKGQWGTVCDDGWTEMNTYVACRLLGFKYGKQSSVNHFDG-SNRP 333

  Fly   123 FWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPPENALIPMATPIIRDED----LPKY 183
            .|:|::.|.|.|...:.|....||.:||...|..|:.|||              |.|    .|.:
Mouse   334 IWLDDVSCSGKEVSFIQCSRRQWGRHDCSHREDVGLTCYP--------------DSDGHRLSPGF 384

  Fly   184 PIHSRSRLYVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYASEAFQTDF 248
            ||        ||..|.::.||||||.:: |:||::|.|||:...|.|:|||||....:.|....:
Mouse   385 PI--------RLVDGENKKEGRVEVFVN-GQWGTICDDGWTDKHAAVICRQLGYKGPARARTMAY 440

  Fly   249 FGGFNVSRPV-LSGSECYGNETELADCLHHDASQGIISCHGNRQHVAAVICDYIAPDLVVDYLEI 312
            ||  ....|: :...:|.|||..||||:..|.  |..:|..:..  |.|||||:.          
Mouse   441 FG--EGKGPIHMDNVKCTGNEKALADCVKQDI--GRHNCRHSED--AGVICDYLE---------- 489

  Fly   313 EQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWRYRSRRLLKFTAAAINAGNADFRPFKEK 377
            ::.:...::.||...|.:                        |||......|..||...|     
Mouse   490 KKASSSGNKEMLSSGCGL------------------------RLLHRRQKRIIGGNNSLR----- 525

  Fly   378 SQWEWHMCHMHFHSMEVFATFDIFNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNC--------- 433
            ..|.|..                 :|| ::.|.|        |...|.|.....:|         
Mouse   526 GAWPWQA-----------------SLR-LRSAHG--------DGRLLCGATLLSSCWVLTAAHCF 564

  Fly   434 ANYGDQGISINCSDVYLYNLDCQWVDVTDLIPGTY-----VLKIAINPEFKVAEMNYD 486
            ..||      |.|..|...:.    |...|:|..:     |.:|.|:..::....:||
Mouse   565 KRYG------NNSRSYAVRVG----DYHTLVPEEFEQEIGVQQIVIHRNYRPDRSDYD 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 37/99 (37%)
SRCR 66..160 CDD:278931 33/93 (35%)
SR 193..298 CDD:214555 40/105 (38%)
SRCR 198..298 CDD:278931 38/100 (38%)
Lysyl_oxidase 303..503 CDD:279521 33/198 (17%)
Prss12NP_032965.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 25..87
KR 83..159 CDD:214527
SR 166..265 CDD:214555
SRCR 171..265 CDD:278931
SR 273..372 CDD:214555 37/99 (37%)
SRCR 278..371 CDD:278931 33/93 (35%)
SR 386..485 CDD:214555 41/113 (36%)
SRCR 396..485 CDD:278931 37/95 (39%)
Zymogen activation region 505..516 4/34 (12%)
Tryp_SPc 516..755 CDD:214473 27/138 (20%)
Tryp_SPc 517..758 CDD:238113 27/137 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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