DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and SSC4D

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_024302432.1 Gene:SSC4D / 136853 HGNCID:14461 Length:604 Species:Homo sapiens


Alignment Length:249 Identity:94/249 - (37%)
Similarity:128/249 - (51%) Gaps:19/249 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 IRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARRRFWM 125
            :|||||.:...|.:||:|.|.||:||||:||..:|::||||||........|...||..|....:
Human    87 LRLVGGPSRCRGRLEVMHGGSWGSVCDDDWDVVDANVVCRQLGCGLALPVPRPLAFGQGRGPILL 151

  Fly   126 DNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVC------YPPENALIPMATPIIRDEDLPKYP 184
            ||:.|.|.|..|.:|...|||.::|...|...|:|      .||...::....|   ...||   
Human   152 DNVECRGQEAALSECGSRGWGVHNCFHYEDVAVLCDEFLPTQPPTRKMLTSRAP---PTTLP--- 210

  Fly   185 IHSRSRLYVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYASEAFQTDFF 249
             :.:|...|||.||.:..:||||: |..|.||:||.|.|.|.:|.|||||||.| |:.|..|:.|
Human   211 -NGKSEGSVRLVGGANLCQGRVEI-LHSGLWGTVCDDDWGLPDAAVVCRQLGCG-AAMAATTNAF 272

  Fly   250 GGFNVSRPVLSGSECYGNETELADCLHHDASQGIISCHGNRQHVAAVICDYIAP 303
            .|:.....:|....|.|.|..||.|  .....|:.:| |:.:. |..:|..:.|
Human   273 FGYGTGHILLDNVHCEGGEPRLAAC--QSLGWGVHNC-GHHED-AGALCAGLGP 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 43/105 (41%)
SRCR 66..160 CDD:278931 38/93 (41%)
SR 193..298 CDD:214555 43/104 (41%)
SRCR 198..298 CDD:278931 39/99 (39%)
Lysyl_oxidase 303..503 CDD:279521 1/1 (100%)
SSC4DXP_024302432.1 SR 87..186 CDD:214555 42/98 (43%)
SR 218..317 CDD:214555 43/104 (41%)
SR 373..472 CDD:214555
SR 502..602 CDD:214555
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6689
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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