DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and Cd6

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_033982.3 Gene:Cd6 / 12511 MGIID:103566 Length:665 Species:Mus musculus


Alignment Length:253 Identity:77/253 - (30%)
Similarity:103/253 - (40%) Gaps:58/253 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 EEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFGPARR 121
            |..|:|||.|.:...|.:|:|.:|:||.||||.||..:|.:||:||......:......|.|.:.
Mouse   156 ENQAVRLVDGSSRCAGRVEMLEHGEWGTVCDDTWDLQDAHVVCKQLKCGWAVKALAGLHFTPGQG 220

  Fly   122 RFWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPPENALIPMATPIIRDEDLPKYPIH 186
            ....|.:.|.|.|..|.||.... |:..|...|.|||||...::                     
Mouse   221 PIHRDQVNCSGTEAYLWDCPGRP-GDQYCGHKEDAGVVCSEHQS--------------------- 263

  Fly   187 SRSRLYVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLGLGYASEAFQTDFFGG 251
                  .||.||....||:|||.. .|.|.:||...|...||.|:||.||.|.|           
Mouse   264 ------WRLTGGIDSCEGQVEVYF-RGVWSTVCDSEWYPSEAKVLCRSLGCGSA----------- 310

  Fly   252 FNVSRP-----VLSGS---ECYGNETELADC--------LHHDASQGIISCHGNRQHV 293
              |:||     .|.|.   .|.|.|..|:.|        |...:....:.|.|:::|:
Mouse   311 --VARPRGLPHSLDGRMYYSCKGQEPALSTCSWRFNNSNLCSQSRAARVVCSGSQRHL 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 37/99 (37%)
SRCR 66..160 CDD:278931 33/93 (35%)
SR 193..298 CDD:214555 37/117 (32%)
SRCR 198..298 CDD:278931 34/112 (30%)
Lysyl_oxidase 303..503 CDD:279521
Cd6NP_033982.3 SR 160..259 CDD:214555 37/99 (37%)
SRCR 165..259 CDD:278931 34/94 (36%)
SR 264..360 CDD:214555 34/109 (31%)
SRCR 269..360 CDD:278931 31/104 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 536..665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847085
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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