DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and ssc4d

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_031752817.1 Gene:ssc4d / 100488350 XenbaseID:XB-GENE-951347 Length:566 Species:Xenopus tropicalis


Alignment Length:257 Identity:89/257 - (34%)
Similarity:128/257 - (49%) Gaps:31/257 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 VLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSGFFG 117
            |:..|:..||||.|.|..:|.:|:||||.||.||||:||..:|:::|||||............||
 Frog    43 VVKAEDAEIRLVNGKNRCQGRVEILHNGTWGTVCDDDWDIVDANVICRQLGCGHAIAIPLRISFG 107

  Fly   118 PARRRFWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPPENALIPMATPIIRDEDLPK 182
            .......:||:.|:|.|..|..|...|||.::|...|...|.|    |..:|  ||..:.     
 Frog   108 QGTGPIHLDNVDCKGRETALSQCRSLGWGIHNCYHYEDVAVTC----NEFLP--TPASKG----- 161

  Fly   183 YPIHSRSRL-----------YVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEANVVCRQLG 236
               ||....           .:||..|....:||||: |..|.||:||.|.|.|.:|:|||||:|
 Frog   162 ---HSTKAASTSLQNGQRDGSIRLVNGADSCQGRVEI-LYKGNWGTVCDDDWGLNDASVVCRQVG 222

  Fly   237 LGYASEAFQTDFFGGFNVSRPVLSGSECYGNETELADCLHHDASQGIISCHGNRQHVAAVIC 298
            .|.|.: ::::.:.|:.....:|....|.|:|..|:.|  :....||.:| |:.:. |.:||
 Frog   223 CGQAMD-YKSNAYFGYGTGLILLDNVNCDGSEPYLSTC--YSLGWGIHNC-GHHED-AGIIC 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 41/99 (41%)
SRCR 66..160 CDD:278931 37/93 (40%)
SR 193..298 CDD:214555 37/104 (36%)
SRCR 198..298 CDD:278931 35/99 (35%)
Lysyl_oxidase 303..503 CDD:279521
ssc4dXP_031752817.1 SR 51..151 CDD:214555 42/103 (41%)
SR 180..280 CDD:214555 39/106 (37%)
SR 336..436 CDD:214555
SR 465..564 CDD:214555
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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