DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl2 and loxl2

DIOPT Version :9

Sequence 1:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001135520.1 Gene:loxl2 / 100216062 XenbaseID:XB-GENE-1010775 Length:767 Species:Xenopus tropicalis


Alignment Length:470 Identity:202/470 - (42%)
Similarity:267/470 - (56%) Gaps:45/470 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YTKVLNKEEGAIRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFPGMRRYTRSG 114
            :.|...:|:..:||.||.|..||.:|||.||:||.:|||:|:...|.:|||:|||...:......
 Frog   308 FRKAFRQEQPLVRLRGGANTGEGRVEVLKNGEWGTICDDKWNLVTASVVCRELGFGSAKEALAGA 372

  Fly   115 FFGPARRRFWMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPP----ENALIPMATPII 175
            ..|.......|..:.|.|.|:.|:||.|....:. |...|.|.|.|..|    ||          
 Frog   373 QMGQGMGHIHMSEIQCNGFEKSLIDCKFNVHSQG-CNHEEDAAVRCNVPAMGFEN---------- 426

  Fly   176 RDEDLPKYPIHSRSRLYVRLRGGRSRIEGRVEVSLDGG---RWGSVCADGWSLLEANVVCRQLGL 237
                            .|||.|||...||||||.::..   |||:||:|.|..:||.:|||||||
 Frog   427 ----------------QVRLSGGRHPTEGRVEVLMERNGTLRWGTVCSDTWGTMEAMIVCRQLGL 475

  Fly   238 GYASEAFQTDFF--GGFNVSRPVLSGSECYGNETELADCLHHDASQGIISC-HGNRQHVAAVICD 299
            |:||.|||..::  |..|....|:||.:|.|.|..||.|.|..|:   |:| .|..:..|.|.|.
 Frog   476 GFASHAFQETWYWQGDINADDVVMSGVKCSGTEMSLAHCRHDGAN---INCPRGGGRFAAGVSCV 537

  Fly   300 YIAPDLVVDYLEIEQTAHLEDRPMLLMQCAMEENCVANEAYQIQRDDPHWRYRSRRLLKFTAAAI 364
            ..|||||::...:|||.:||||||.::|||.||.|:::.|   .|..|...|  ||||:|::...
 Frog   538 ETAPDLVLNAALVEQTTYLEDRPMFMLQCAHEEQCLSSSA---DRTSPTTGY--RRLLRFSSQIH 597

  Fly   365 NAGNADFRPFKEKSQWEWHMCHMHFHSMEVFATFDIFNLRGIKVAQGHKASFCLEDSNCLPGVAK 429
            |.|.|||||...:..|.||.||.|:||||||..:|:.:|.|.|||:|||||||||||.|...|.|
 Frog   598 NNGQADFRPKTGRHSWIWHDCHRHYHSMEVFTHYDLLSLNGTKVAEGHKASFCLEDSECETDVQK 662

  Fly   430 KYNCANYGDQGISINCSDVYLYNLDCQWVDVTDLIPGTYVLKIAINPEFKVAEMNYDNNAAICDL 494
            :|.|||:|:|||::.|.|||.:::||||||:||:.||.|..::.|||..:|||.:|.||...|..
 Frog   663 QYACANFGEQGITVGCWDVYRHDIDCQWVDITDVAPGDYFFQVIINPNQEVAESDYTNNIMKCRC 727

  Fly   495 IYTANFARVQNCQLG 509
            .|..:...:.||.:|
 Frog   728 RYDGHRIWMYNCHIG 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl2NP_523806.2 SR 61..161 CDD:214555 38/99 (38%)
SRCR 66..160 CDD:278931 35/93 (38%)
SR 193..298 CDD:214555 52/110 (47%)
SRCR 198..298 CDD:278931 48/105 (46%)
Lysyl_oxidase 303..503 CDD:279521 101/199 (51%)
loxl2NP_001135520.1 SR 51..152 CDD:214555
SR 194..295 CDD:214555
SR 319..418 CDD:214555 38/99 (38%)
SR 428..536 CDD:214555 52/110 (47%)
Lysyl-oxidase like. /evidence=ECO:0000250 541..744 104/207 (50%)
Lysyl_oxidase 541..741 CDD:366506 103/204 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 227 1.000 Domainoid score I2446
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1742
Inparanoid 1 1.050 382 1.000 Inparanoid score I2006
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D376277at33208
OrthoFinder 1 1.000 - - FOG0000389
OrthoInspector 1 1.000 - - otm48911
Panther 1 1.100 - - O PTHR45817
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5813
SonicParanoid 1 1.000 - - X896
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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