DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4021 and KHSRP

DIOPT Version :9

Sequence 1:NP_611610.2 Gene:CG4021 / 37484 FlyBaseID:FBgn0034659 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001353228.1 Gene:KHSRP / 8570 HGNCID:6316 Length:747 Species:Homo sapiens


Alignment Length:62 Identity:16/62 - (25%)
Similarity:33/62 - (53%) Gaps:9/62 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 IQKVFVPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIALKGRSSMRDRNKEEELR--SDP 144
            :|::.:|..:      ||.::|..|.::::|||....|:.|. :...::.|.::.||  .||
Human   235 VQEIMIPAGK------AGLVIGKGGETIKQLQERAGVKMILI-QDGSQNTNVDKPLRIIGDP 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4021NP_611610.2 SF1_like-KH 86..202 CDD:239088 16/61 (26%)
KHSRPNP_001353228.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..147
KH-I_FUBP2_rpt1 145..215 CDD:411907
KH-I_FUBP2_rpt2 233..305 CDD:411910 16/62 (26%)
KH-I_FUBP2_rpt3 323..390 CDD:411913
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..429
KH-I_FUBP2_rpt4 426..494 CDD:411916
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 497..569
4 X 12 AA imperfect repeats 571..684
DUF1897 671..>685 CDD:401086
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D590738at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.010

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