DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4021 and khdrbs1

DIOPT Version :10

Sequence 1:NP_611610.2 Gene:CG4021 / 37484 FlyBaseID:FBgn0034659 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001017045.1 Gene:khdrbs1 / 549799 XenbaseID:XB-GENE-479347 Length:360 Species:Xenopus tropicalis


Alignment Length:196 Identity:73/196 - (37%)
Similarity:118/196 - (60%) Gaps:16/196 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 EIAQKFLADLDEERQRLSAEFPLCALLIDEARDRVYATG--RIPGKELYADVYRQKPMKIIQKVF 89
            |...|:|.:|..|:..|...|.....|:.:..:|:...|  :...::.|.|::..|.||:.:::.
 Frog     2 ETETKYLPELMAEKDSLDPSFTHAMSLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERIL 66

  Fly    90 VPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIALKGRSSMRDRNKEEELR--SDPRYAHLQKN 152
            :||..||||||.||||||:||:::||||||..||::.|:.||||:.||||||  .||:|:||..:
 Frog    67 IPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMD 131

  Fly   153 LFLEVSTVAIPAECHSRIAYALAEIRKYLIP---------DNNDEVSHEQLRELMEID---PESA 205
            |.:.:.....|.|.::|:|:|:.|::|:|:|         |..|::..||..||..::   ||.:
 Frog   132 LHVFIEVFGPPCESYTRMAHAMEEVKKFLVPLTPESFSYQDMMDDICQEQFMELSYLNGAPPEQS 196

  Fly   206 K 206
            :
 Frog   197 R 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4021NP_611610.2 KH-I_KHDRBS 80..179 CDD:411812 50/100 (50%)
khdrbs1NP_001017045.1 Qua1 6..58 CDD:465079 11/51 (22%)
KH-I_KHDRBS1 57..162 CDD:411896 52/104 (50%)
Sam68-YY 282..330 CDD:465182
Blue background indicates that the domain is not in the aligned region.

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