DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4021 and gld-1

DIOPT Version :9

Sequence 1:NP_611610.2 Gene:CG4021 / 37484 FlyBaseID:FBgn0034659 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_492143.1 Gene:gld-1 / 172532 WormBaseID:WBGene00001595 Length:463 Species:Caenorhabditis elegans


Alignment Length:225 Identity:73/225 - (32%)
Similarity:118/225 - (52%) Gaps:37/225 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PTTTHEYQPRLNEIAQKFLADLDEERQRLSAEFP-----LCALLIDE---ARDRVYATGRIPGKE 71
            ||.|   :|...|...::||||.:|::.|:. ||     :..||.||   .|..::.| ..|..|
 Worm   135 PTAT---EPIEVEATVEYLADLVKEKKHLTL-FPHMFSNVERLLDDEIGRVRVALFQT-EFPRVE 194

  Fly    72 LYADVYRQKP----MKIIQKVFVPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIALKGRSSMR 132
            |      .:|    :.|.:|::||.|:||.:||.|:||||:|.:.::|:::|.|||.::|:.|||
 Worm   195 L------PEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMR 253

  Fly   133 DRNKEEELRSDPRYAHLQKNLFLEVSTVAIPAECHSRIAYALAEIRKYLI--PDNNDEVSHEQLR 195
            |::||...|....:.||:.:|.:.|.........|.::..||.:::|.||  |:..||:..:||.
 Worm   254 DKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLM 318

  Fly   196 ELMEIDPESAKNFKGLNLEAYRSVRDSNGA 225
            ||..|:            ..||.::..|.|
 Worm   319 ELAIIN------------GTYRPMKSPNPA 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4021NP_611610.2 SF1_like-KH 86..202 CDD:239088 45/117 (38%)
gld-1NP_492143.1 STAR_dimer 144..190 CDD:293152 15/47 (32%)
SF1_like-KH 206..328 CDD:239088 45/133 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.