DRSC/TRiP Functional Genomics Resources

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Protein Alignment LBR and Lbr

DIOPT Version :9

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_598576.2 Gene:Lbr / 98386 MGIID:2138281 Length:626 Species:Mus musculus


Alignment Length:668 Identity:164/668 - (24%)
Similarity:281/668 - (42%) Gaps:99/668 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GSGSGSSLPIKAAIKARTPIPEVSEV----SSPIRLSTSNL-PMTLTTNTSSG----APNKAFNT 173
            |...||||..:..|.:.....::..|    .:.:.|..|:: |:.......||    :|::...:
Mouse    14 GRWPGSSLYYEVEILSHDNKSQLYTVKYKDGTELELKESDIKPLKSFKQRKSGSISSSPSRRRGS 78

  Fly   174 SSVNSGNSFSRTTTSSTTTTTERIEIRAEGD------GEVDTDSIRKRITERLRRSVSKTISNLA 232
            .|.:...|.||:...:...:...:....|||      .|:..:.::.::|..:.:....::|...
Mouse    79 RSRSRSRSRSRSPGRAPKGSRRSVSASHEGDVKEKKEKEMRREILQVKLTPLVLKPFGNSVSVYN 143

  Fly   233 GTPVTNTEEGSRYSRSVSRSVYDDEKS---SKRSYSTGEEDIDEEDELEEDQFRSFNVTRKSATP 294
            |.|....:..:.|.....|.:...|..   ::.|.....|::..::...|:|    |:..|.  |
Mouse   144 GEPEHMEKNATPYKDKQERIILSTEDRYIVTQYSLRPRREEVKAKEIESEEQ----NLVTKG--P 202

  Fly   295 AEISCRQLKAPR----EFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHLNLGILLDVNYL- 354
            |.:...|:..|:    ||||..||.|.:|.||..|..|...|..::.        |:|.....| 
Mouse   203 APLGTFQVTTPQRKDLEFGGVPGAVLIMLGLPACVLLLLLQCRQKDP--------GLLHFPPPLP 259

  Fly   355 -TRQVFQPRVVGAFAAY---QVVVFLL--------VALLPGRRVHLTRETYKFNCLAVSLTLLIA 407
             ..::::|||.|.:..:   |.:..||        ..|:.|||:.     |:.|.|...:....|
Mouse   260 ALHELWEPRVCGVYLLWFFVQALFHLLPVGKVAEGTPLVDGRRLQ-----YRLNGLYAFILTSAA 319

  Fly   408 SGVAEYLKYPVVTFVLRHYLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVV 472
            .|.|.:.... :.::..|:|:..:.....:.:.:|:.|    .......|:.|:.  ..:|:.|.
Mouse   320 LGAAVFWGVE-LCYLYTHFLQLALAATGFSVLLSAYLY----VRSLRAPREELSP--ASSGNAVY 377

  Fly   473 DFALGRQLNPKWLGRVDWKQF-QYRLSLVTTLIYATCYIYQTLVWPQK--PQLGEQEGYLYQAKY 534
            ||.:||:|||: ||..|.|.| :.|..|:..::.....:...:...::  |.|            
Mouse   378 DFFIGRELNPR-LGAFDLKFFCELRPGLIGWVVINLVMLLMEMKIQERAAPSL------------ 429

  Fly   535 YWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHEGYGCLLL---LRYAATPYLLTAVT 596
                     |.:...|..|.||:||:..|..|.:|.::.|:|:|.:|.   |.:....|.|.|  
Mouse   430 ---------AMILVNSFQLLYVVDALWNEEALLTSMDIMHDGFGFMLAFGDLVWVPFTYSLQA-- 483

  Fly   597 KYFYEQRVPIS-CWYAPLA--VAALLSLGLLVKRFSCAYKYKYRLNSQSPIFANIETIHTYQGSR 658
              ||....|.. .|  |||  :.||...|.::.|.:.:.|..:|.|...|..|:::||||..|..
Mouse   484 --FYLVSHPHDLSW--PLASVIIALKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKS 544

  Fly   659 LLLSGMWGWVRQPNYLGDIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHS 723
            ||:||.||:||.||||||::..||.:.|....... |...:.....||:||..|...:.:.:|..
Mouse   545 LLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHLL-PYFYIIYFTALLIHREARDEHQCRRKYGL 608

  Fly   724 SWQRYSTQVRSYILPRVY 741
            :|::|..:|...|.|.:|
Mouse   609 AWEKYCQRVPYRIFPYIY 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 PEMT 304..741 CDD:304400 126/462 (27%)
LbrNP_598576.2 LBR_tudor 1..55 CDD:370513 9/40 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..117 12/64 (19%)
PEMT 216..626 CDD:389781 125/458 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7060
eggNOG 1 0.900 - - E1_KOG1435
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2455
Inparanoid 1 1.050 136 1.000 Inparanoid score I4536
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53801
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000851
OrthoInspector 1 1.000 - - oto95142
orthoMCL 1 0.900 - - OOG6_102075
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3179
SonicParanoid 1 1.000 - - X598
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.760

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