DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LBR and Lbr

DIOPT Version :10

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_598576.2 Gene:Lbr / 98386 MGIID:2138281 Length:626 Species:Mus musculus


Alignment Length:668 Identity:164/668 - (24%)
Similarity:281/668 - (42%) Gaps:99/668 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GSGSGSSLPIKAAIKARTPIPEVSEV----SSPIRLSTSNL-PMTLTTNTSSG----APNKAFNT 173
            |...||||..:..|.:.....::..|    .:.:.|..|:: |:.......||    :|::...:
Mouse    14 GRWPGSSLYYEVEILSHDNKSQLYTVKYKDGTELELKESDIKPLKSFKQRKSGSISSSPSRRRGS 78

  Fly   174 SSVNSGNSFSRTTTSSTTTTTERIEIRAEGD------GEVDTDSIRKRITERLRRSVSKTISNLA 232
            .|.:...|.||:...:...:...:....|||      .|:..:.::.::|..:.:....::|...
Mouse    79 RSRSRSRSRSRSPGRAPKGSRRSVSASHEGDVKEKKEKEMRREILQVKLTPLVLKPFGNSVSVYN 143

  Fly   233 GTPVTNTEEGSRYSRSVSRSVYDDEKS---SKRSYSTGEEDIDEEDELEEDQFRSFNVTRKSATP 294
            |.|....:..:.|.....|.:...|..   ::.|.....|::..::...|:|    |:..|.  |
Mouse   144 GEPEHMEKNATPYKDKQERIILSTEDRYIVTQYSLRPRREEVKAKEIESEEQ----NLVTKG--P 202

  Fly   295 AEISCRQLKAPR----EFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHLNLGILLDVNYL- 354
            |.:...|:..|:    ||||..||.|.:|.||..|..|...|..::.        |:|.....| 
Mouse   203 APLGTFQVTTPQRKDLEFGGVPGAVLIMLGLPACVLLLLLQCRQKDP--------GLLHFPPPLP 259

  Fly   355 -TRQVFQPRVVGAFAAY---QVVVFLL--------VALLPGRRVHLTRETYKFNCLAVSLTLLIA 407
             ..::::|||.|.:..:   |.:..||        ..|:.|||:.     |:.|.|...:....|
Mouse   260 ALHELWEPRVCGVYLLWFFVQALFHLLPVGKVAEGTPLVDGRRLQ-----YRLNGLYAFILTSAA 319

  Fly   408 SGVAEYLKYPVVTFVLRHYLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVV 472
            .|.|.:.... :.::..|:|:..:.....:.:.:|:.|    .......|:.|:.  ..:|:.|.
Mouse   320 LGAAVFWGVE-LCYLYTHFLQLALAATGFSVLLSAYLY----VRSLRAPREELSP--ASSGNAVY 377

  Fly   473 DFALGRQLNPKWLGRVDWKQF-QYRLSLVTTLIYATCYIYQTLVWPQK--PQLGEQEGYLYQAKY 534
            ||.:||:|||: ||..|.|.| :.|..|:..::.....:...:...::  |.|            
Mouse   378 DFFIGRELNPR-LGAFDLKFFCELRPGLIGWVVINLVMLLMEMKIQERAAPSL------------ 429

  Fly   535 YWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHEGYGCLLL---LRYAATPYLLTAVT 596
                     |.:...|..|.||:||:..|..|.:|.::.|:|:|.:|.   |.:....|.|.|  
Mouse   430 ---------AMILVNSFQLLYVVDALWNEEALLTSMDIMHDGFGFMLAFGDLVWVPFTYSLQA-- 483

  Fly   597 KYFYEQRVPIS-CWYAPLA--VAALLSLGLLVKRFSCAYKYKYRLNSQSPIFANIETIHTYQGSR 658
              ||....|.. .|  |||  :.||...|.::.|.:.:.|..:|.|...|..|:::||||..|..
Mouse   484 --FYLVSHPHDLSW--PLASVIIALKLCGYVIFRCANSQKNAFRKNPTDPKLAHLKTIHTSTGKS 544

  Fly   659 LLLSGMWGWVRQPNYLGDIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHS 723
            ||:||.||:||.||||||::..||.:.|....... |...:.....||:||..|...:.:.:|..
Mouse   545 LLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHLL-PYFYIIYFTALLIHREARDEHQCRRKYGL 608

  Fly   724 SWQRYSTQVRSYILPRVY 741
            :|::|..:|...|.|.:|
Mouse   609 AWEKYCQRVPYRIFPYIY 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 ICMT 304..741 CDD:473892 126/462 (27%)
LbrNP_598576.2 LBR_tudor 1..55 CDD:462808 9/40 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..117 12/64 (19%)
ICMT 216..626 CDD:473892 125/458 (27%)

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