DRSC/TRiP Functional Genomics Resources

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Protein Alignment LBR and FK

DIOPT Version :9

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_566975.1 Gene:FK / 824460 AraportID:AT3G52940 Length:369 Species:Arabidopsis thaliana


Alignment Length:426 Identity:102/426 - (23%)
Similarity:180/426 - (42%) Gaps:88/426 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   343 LNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVFLLVA--LLPG---RRVHL---TRETYKFNCLA 399
            ::||:||           |.:...:......|:|.||  :|||   |.|.|   ::..|:.|.|.
plant     5 MDLGVLL-----------PSLQSVYVLVFYFVYLAVAGEILPGKVIRGVLLSDGSQLRYRCNGLL 58

  Fly   400 VSLTLLIASGVAEYLKY--PVV-----------TFVLRHYLRFCIFGLVGAFVAAAWSYWLVDTA 451
            ..:.|:...|:...|..  |:|           ||:      ||:...:..:|....|.....:.
plant    59 ALILLVAILGICAKLGIVSPLVVADRGLELLSATFI------FCVLVTLALYVTGRSSSNKGSSL 117

  Fly   452 KYNVLRQTLTNDYGRTGSFVVDFALGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVW 516
            |.:|           :|:.|.|:..|.||||:::. :|.|.|..|..::..|:.....:.:::  
plant   118 KPHV-----------SGNLVHDWWFGIQLNPQFMS-IDLKFFFVRAGMMGWLLINLSILAKSV-- 168

  Fly   517 PQKPQLGEQEGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHEGYGCLL 581
                    |:|.|.|:           ..|:...|.| |:||..:.|.:::|::::..|..|.:|
plant   169 --------QDGSLSQS-----------MILYQIFCAL-YILDYFVHEEYMTSTWDIIAERLGFML 213

  Fly   582 LL-RYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALL--SLGLLVKRFSCAYKYKYRLNSQSP 643
            :. .....|:..:....:....:|.::   .|..|...|  .:|.:|.|.:...|:.::.|.::|
plant   214 VFGDLLWIPFTFSIQGWWLLHNKVELT---VPAIVVNCLVFLIGYMVFRGANKQKHIFKKNPKTP 275

  Fly   644 IFANIETIHTYQGSRLLLSGMWGWVRQPNYLGDIVALLALAAPMALR---PAWPPVLGLSLIILL 705
            |:.....:   .|.:||:||.||..|..|||||::..|:.:.|..:.   |.:.|:    .:::|
plant   276 IWGKPPVV---VGGKLLVSGYWGIARHCNYLGDLMLALSFSLPCGISSPVPYFYPI----YLLIL 333

  Fly   706 LLHRATRANARNQARYHSSWQRYSTQVRSYILPRVY 741
            |:.|..|...|...:|...|..|...|...|||.||
plant   334 LIWRERRDEVRCAEKYKEIWAEYLRLVPWRILPYVY 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 PEMT 304..741 CDD:304400 100/424 (24%)
FKNP_566975.1 PEMT 4..369 CDD:419701 100/424 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 71 1.000 Domainoid score I3365
eggNOG 1 0.900 - - E1_KOG1435
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53801
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000851
OrthoInspector 1 1.000 - - oto3038
orthoMCL 1 0.900 - - OOG6_102075
Panther 1 1.100 - - O PTHR21257
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X598
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.780

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