DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LBR and Tm7sf2

DIOPT Version :9

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_001013089.1 Gene:Tm7sf2 / 293688 RGDID:1311205 Length:418 Species:Rattus norvegicus


Alignment Length:457 Identity:131/457 - (28%)
Similarity:204/457 - (44%) Gaps:64/457 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 KAPREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQFKHLNLGILLDVNYL--TRQVFQPR--- 362
            :||.||||.||....|:|||..:::|..:..:..|        .:|....||  ..:::.||   
  Rat     8 QAPLEFGGPLGVTAMLILLPATMFHLLLAARSGPA--------RLLALPAYLPGLEELWSPRALL 64

  Fly   363 VVGAFAAYQVVVFLLVALLPGRRV-------HLTRETYKFNCL-AVSLT-LLIASGVAEYLKYPV 418
            ::..:...||.::    |||.|:|       ..:|..|..|.. |:.|| ||:..||:..|....
  Rat    65 LLFIWLGLQVALY----LLPARKVAEGLELKDKSRLRYPINGFQALVLTALLVGLGVSVGLPLGA 125

  Fly   419 VTFVLRHYLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFALGRQLNPK 483
            :..:|        ..|..|....::.:.|:..||..|...:.....|.:|:.|.||.|||:|||:
  Rat   126 LPGML--------LPLAFATTLTSFIFSLLLYAKALVAPASALAPGGNSGNSVYDFFLGRELNPR 182

  Fly   484 WLGRVDWKQF-QYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQEGYLYQAKYYWNNVNYDPATLF 547
             ||..|:|.| :.|..|:..:......:.|.......|.|         |.:..|...       
  Rat   183 -LGSFDFKYFCELRPGLIGWVFINLALLMQEAELRGSPSL---------AMWLVNGFQ------- 230

  Fly   548 SASCLLFYVLDAIIFEHHLSSSFELQHEGYGCLLL---LRYAATPYLLTAVTKYFYEQRVPISCW 609
                 |.||.||:.:|..:.::.::.|:|:|.:|:   |.:....|.|.|....::.|  |:...
  Rat   231 -----LLYVGDALWYEESVLTTMDIIHDGFGFMLVFGDLAWVPFTYSLQAQFLLYHPQ--PLGLP 288

  Fly   610 YAPLAVAALLSLGLLVKRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYL 674
            .| |.:..:.::|..:.|.:.:.|..:|.|...|..|.:|||.|..|.:||:||.||.||.||||
  Rat   289 MA-LLICLIKAVGYYIFRGANSQKNTFRKNPSDPSVAGLETIPTATGRQLLVSGWWGMVRHPNYL 352

  Fly   675 GDIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSWQRYSTQVRSYILPR 739
            ||::..||.:.|..|.... |...|.....||:||..|...:...:|..:||.|..:|...|:|.
  Rat   353 GDLIMALAWSLPCGLSHLL-PYFYLLYFTALLVHREARDEQQCLRKYGRAWQEYCKRVPYRIIPY 416

  Fly   740 VY 741
            ||
  Rat   417 VY 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 PEMT 304..741 CDD:304400 129/454 (28%)
Tm7sf2NP_001013089.1 PEMT 8..418 CDD:419701 129/455 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6883
eggNOG 1 0.900 - - E1_KOG1435
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 132 1.000 Inparanoid score I4518
OMA 1 1.010 - - QHG53801
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000851
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102075
Panther 1 1.100 - - LDO PTHR21257
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X598
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.830

Return to query results.
Submit another query.