DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LBR and sts1

DIOPT Version :9

Sequence 1:NP_726114.1 Gene:LBR / 37482 FlyBaseID:FBgn0034657 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_594742.1 Gene:sts1 / 2541740 PomBaseID:SPAC20G4.07c Length:453 Species:Schizosaccharomyces pombe


Alignment Length:512 Identity:110/512 - (21%)
Similarity:185/512 - (36%) Gaps:141/512 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 APREFGGWLGAFLFLLLLPTAVYYLTWSCTARNACQF-------------KHLNLGILLDVN-YL 354
            |||||||..||...:...|..:||| |:|:..|..||             ....||..:.|. |.
pombe     9 APREFGGAKGALAIMTGFPCLMYYL-WACSKFNDSQFIKPESFTIAGFQNFFRTLGHYIYVGAYP 72

  Fly   355 TRQVFQPRVVGAFAAYQVVVFLLVALLPGRRV------HLTRETYKFNCLAV---SLTLLIASGV 410
            ||..|  .|..:|...|.|::|   .|||.|.      |...|...:.|.|:   ..|::|.:.:
pombe    73 TRYAF--LVFWSFCIVQAVMYL---TLPGVRTQGLPLKHRNNERLPYLCNAIWSFYTTIVILAVL 132

  Fly   411 AEYLKYPVVTFVLRHYLRFCIFG------LVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGS 469
            .....:|:.||:       .:||      ::.|||..    :::.|.......:.....:..:|:
pombe   133 HVTHVFPITTFI-------DMFGPLMSVAIITAFVCT----FVLYTGTLLFGDRLFDKPHRLSGN 186

  Fly   470 FVVDFALGRQLNPKWLGR-VDWKQ-FQYRLS---LVTTLIYATCYIYQT--LVWPQKPQLGEQEG 527
            .:.|..:|..|||: ||: :|:|. |:.|:.   |....:.|....|:|  .|.||         
pombe   187 PIYDAFMGACLNPR-LGKLLDFKMFFEVRIPWFILFFISVGAAVRQYETYGTVSPQ--------- 241

  Fly   528 YLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIF-------EHHLSSSFELQHEGYGCLLLL-R 584
                                    :||..|...::       |..:..::::.:|.:|.:|:. .
pombe   242 ------------------------VLFVCLGHYLYANACSKGEQLIVPTWDMAYEKFGFMLIFWN 282

  Fly   585 YAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLVKRFSCAY--------KYKYRLN-- 639
            .|..|:..:..|.|.:.....:..|      :...:.|:.|....|.|        |..:|..  
pombe   283 MAGVPFTYSHCTLYLFSHDPSVYNW------STQYTTGIYVLLLCCYYIFDTCNGQKNHFRNQIY 341

  Fly   640 ---------SQSP--IFANIETIHTYQGSRLLLSGMWGWVRQPNYLGDIVALLALAAPMALRPAW 693
                     .|.|  |..|...|....|..||.||.:.:.|:.:|..|....|          :|
pombe   342 GTEVHRKTFPQLPWLIIKNPTFIRCANGGTLLTSGWYRYARKIHYTADFFQSL----------SW 396

  Fly   694 PPVLGLS---------LIILLLLHRATRANARNQARYHSSWQRYSTQVRSYILPRVY 741
            ..:.|..         ...::|:||.:|...:.:|:|.:.:..|........:|.::
pombe   397 ALITGFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKYGADFDEYCRICPYLFIPYIF 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LBRNP_726114.1 PEMT 304..741 CDD:304400 110/510 (22%)
sts1NP_594742.1 ERG4_ERG24 7..453 CDD:250456 110/510 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 83 1.000 Domainoid score I2251
eggNOG 1 0.900 - - E1_KOG1435
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000851
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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