DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and NHP6B

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_009647.2 Gene:NHP6B / 852386 SGDID:S000002157 Length:99 Species:Saccharomyces cerevisiae


Alignment Length:70 Identity:25/70 - (35%)
Similarity:41/70 - (58%) Gaps:2/70 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            |||.|||||.:.|..|:.::.|||.:...:|.:..||.|:|:  ::|..:|:||...|..|:...
Yeast    27 PKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEK 91

  Fly    68 KEFEA 72
            :.:.|
Yeast    92 ELYNA 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 22/65 (34%)
NHP6BNP_009647.2 HMG-box_NHP6-like 14..94 CDD:438792 24/66 (36%)

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