DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and AT1G76110

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_177738.1 Gene:AT1G76110 / 843943 AraportID:AT1G76110 Length:338 Species:Arabidopsis thaliana


Alignment Length:69 Identity:18/69 - (26%)
Similarity:29/69 - (42%) Gaps:5/69 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRA 66
            ||.|  |.|..:.......:|...|. |..|..|..||.|.  :.:::..::....|.|:.|.|.
plant   256 KPNR--SGYNFFFAEKHCKLKSLYPN-KEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRE 317

  Fly    67 VKEF 70
            :.|:
plant   318 LNEY 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/66 (24%)
AT1G76110NP_177738.1 ARID_HMGB9-like 40..125 CDD:350636
HMG-box_AtHMGB9-like 255..321 CDD:438825 17/67 (25%)
Blue background indicates that the domain is not in the aligned region.

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