Protein Alignment HmgD and Tfam

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_112616.2
• Gene: Tfam / 83474
• RGDID: 620682
• Length: 244
• Species: Rattus norvegicus
• Alignment Length: 140
• Identity: 31/140 - (22%)
• Similarity: 58/140 - (41%)
• Gaps: 37/140 - (26%)

  Fly     1 MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD----------KSEWEAK 55
            :.:.||:|:|:|:.:........|.::|..||:|:.::...:||.:.:          |:||:.
  Rat    45 LGNYPKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKV- 108

  Fly    56 AAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKE------------------- 101
                   |..||.:::.....|...|...:.|.|..||.|:..::|
  Rat   109 -------YKEAVSKYKEQLTPSQLMGLEKEARQKRLKKKAQIKRRELILLGKPKRPRSAYNIYVS 166

  Fly   102 ESDEDDDDES 111
            ||.::..|||
  Rat   167 ESFQEAKDES 176

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	17/72 (24%)
Tfam	NP_112616.2	NHP6B	<46..215	CDD:227935	31/139 (22%)
		HMG_box	49..116	CDD:395407	18/74 (24%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	221..244

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.920