DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and 3xHMG-box2

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_194111.1 Gene:3xHMG-box2 / 828480 AraportID:AT4G23800 Length:456 Species:Arabidopsis thaliana


Alignment Length:101 Identity:33/101 - (32%)
Similarity:56/101 - (55%) Gaps:19/101 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSE--WEAKAAKAKDDYDRA 66
            |||.|:||::::.|..|.:::.||.  .|.||||..||.|:.:.||.:  :|..|.|.|:.|.:|
plant   254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQA 316

  Fly    67 VKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEE 102
            ::|:               ||.|..:.:::|.::||
plant   317 MEEY---------------KRTKEEEALSQKKEEEE 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 24/65 (37%)
3xHMG-box2NP_194111.1 PTZ00121 <2..454 CDD:173412 33/101 (33%)
HMG-box_AtHMGB6-like_rpt1 139..206 CDD:438822
HMG-box_AtHMGB6-like_rpt2 255..320 CDD:438823 25/66 (38%)
HMG-box_AtHMGB6-like_rpt3 371..447 CDD:438824
Blue background indicates that the domain is not in the aligned region.

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