DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and 3xHMG-box1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_192846.1 Gene:3xHMG-box1 / 826709 AraportID:AT4G11080 Length:446 Species:Arabidopsis thaliana


Alignment Length:101 Identity:33/101 - (32%)
Similarity:55/101 - (54%) Gaps:19/101 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRA 66
            |||:|:|||:::.|..|.::|.||.  .|.||||..||.|:.:.:  |:.::..|.|.|:.|   
plant   245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIY--- 304

  Fly    67 VKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEE 102
            ::|.|            ..||.|..:.:::|.::||
plant   305 LQEME------------GYKRTKEEEAMSQKKEEEE 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 23/65 (35%)
3xHMG-box1NP_192846.1 PTZ00121 <11..361 CDD:173412 33/101 (33%)
HMG-box_AtHMGB6-like_rpt1 130..197 CDD:438822
HMG-box_AtHMGB6-like_rpt2 246..311 CDD:438823 26/81 (32%)
HMG-box_AtHMGB6-like_rpt3 363..440 CDD:438824
Blue background indicates that the domain is not in the aligned region.

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