DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and AT3G13350

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_566454.1 Gene:AT3G13350 / 820535 AraportID:AT3G13350 Length:319 Species:Arabidopsis thaliana


Alignment Length:79 Identity:18/79 - (22%)
Similarity:35/79 - (44%) Gaps:3/79 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYD 64
            :.|||...|.|..:.......:|.|..| :...:.|:.|.:|..:  .:|..::.|..|..:.|.
plant   235 TQKPKCHRSGYNFFFAEQYARLKPEYHG-QERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYR 298

  Fly    65 RAVKEFEANGGSSA 78
            ..:.|::::..|.|
plant   299 IEMLEYKSSHESGA 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 13/65 (20%)
AT3G13350NP_566454.1 ARID_HMGB9-like 42..127 CDD:350636
HMG-box_AtHMGB9-like 238..304 CDD:438825 14/66 (21%)
Blue background indicates that the domain is not in the aligned region.

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