DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Ssrp1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_008760215.3 Gene:Ssrp1 / 81785 RGDID:621143 Length:802 Species:Rattus norvegicus


Alignment Length:146 Identity:51/146 - (34%)
Similarity:75/146 - (51%) Gaps:38/146 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            ||||:||||||||::||.||.::|||.:|:::|:.||:|:.|  :.|.||:.||..|:.:|::|:
  Rat   640 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAM 704

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAK------------------------------------ 96
            ||:|...|.|:......||:...||...|                                    
  Rat   705 KEYEGGRGDSSKRDKSKKKKKVKAKLEKKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGEN 769

  Fly    97 KSKKEESDEDDDDESE 112
            ||||:....:|.||.|
  Rat   770 KSKKKRRRSEDSDEEE 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 33/65 (51%)
Ssrp1XP_008760215.3 POB3 114..573 CDD:227494
HMG-box_SSRP1-like 642..708 CDD:438810 33/65 (51%)
Blue background indicates that the domain is not in the aligned region.

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