DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmgb1b

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001092721.2 Gene:hmgb1b / 795095 ZFINID:ZDB-GENE-030131-8480 Length:197 Species:Danio rerio


Alignment Length:112 Identity:39/112 - (34%)
Similarity:59/112 - (52%) Gaps:20/112 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.::....|..||.||||:.:.::||:.||:|.  :.:.|..:|.||||.|:.||:.:
Zfish    94 PKRPPSAFFIFCGDYRPKIKGENPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDI 158

  Fly    68 KEFEANG--GSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            ..:...|  |.|...||                :.:|.|||||:|.:
Zfish   159 ALYRTKGIAGFSKKEGG----------------EDDEEDEDDDEEED 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 25/65 (38%)
hmgb1bNP_001092721.2 HMG-box_HMGB_rpt1 7..75 CDD:438794
HMG-box_HMGB_rpt2 92..162 CDD:438795 27/67 (40%)
Blue background indicates that the domain is not in the aligned region.

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