DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Hmgb4

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001102933.1 Gene:Hmgb4 / 685271 RGDID:1596426 Length:181 Species:Rattus norvegicus


Alignment Length:84 Identity:25/84 - (29%)
Similarity:45/84 - (53%) Gaps:2/84 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAV 67
            |::|.|:::|:.......:|:|||...|.:|||..|::|..:.  ||..:|.|||..:..|.:..
  Rat    93 PRKPPSSFLLFSLDHFAKLKQENPNWTVVQVAKAAGKMWSMITDVDKRPYEQKAAIMRAKYFQER 157

  Fly    68 KEFEANGGSSAANGGGAKK 86
            :.:.:...:|..|..|:.|
  Rat   158 EAYLSQCQNSKINLQGSSK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 20/65 (31%)
Hmgb4NP_001102933.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 92..160 CDD:438795 21/66 (32%)
Blue background indicates that the domain is not in the aligned region.

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