DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and SSRP1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_016873669.2 Gene:SSRP1 / 6749 HGNCID:11327 Length:875 Species:Homo sapiens


Alignment Length:132 Identity:52/132 - (39%)
Similarity:78/132 - (59%) Gaps:25/132 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            ||||:||||||||::||.||.::|||.:|:::|:.||:|:.|  :.|.||:.||..|:.||::|:
Human   713 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAM 777

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKS-------------------KKEE---SDEDDDDE 110
            ||:|...|.|:.. ..:||:.|...|:.|||                   |.:|   |||....|
Human   778 KEYEGGRGESSKR-DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGE 841

  Fly   111 SE 112
            ::
Human   842 NK 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 34/65 (52%)
SSRP1XP_016873669.2 POB3 187..646 CDD:227494
HMG-box_SSRP1-like 715..781 CDD:438810 34/65 (52%)
Blue background indicates that the domain is not in the aligned region.

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