DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and SOX9

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_000337.1 Gene:SOX9 / 6662 HGNCID:11204 Length:509 Species:Homo sapiens


Alignment Length:120 Identity:28/120 - (23%)
Similarity:55/120 - (45%) Gaps:10/120 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKP--KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSE----WEAKAAKAKD 61
            :||  |||::|:|:|..:||..:..:.|.:...|::|..|:|||.:.:..:    .||:..:.:.
Human   101 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQH 165

  Fly    62 DYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAK----KSKKEESDEDDDDESE 112
            ..|....:::.....|..||....:.|.....::.    |:.:.:|.......||
Human   166 KKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSE 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 17/67 (25%)
SOX9NP_000337.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67
Sox_N 22..94 CDD:463586
Dimerization (DIM). /evidence=ECO:0000305|PubMed:31194875 63..103 0/1 (0%)
PQA. /evidence=ECO:0000305|PubMed:31194875 63..103 0/1 (0%)
HMG-box_SoxE 104..178 CDD:438840 18/73 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..273 9/61 (15%)
Transactivation domain (TAM). /evidence=ECO:0000269|PubMed:31194875 224..307
9aaTAD 1. /evidence=ECO:0000269|PubMed:31194875 275..284
9aaTAD 2. /evidence=ECO:0000269|PubMed:31194875 290..298
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..415
Transactivation domain (TAC). /evidence=ECO:0000269|PubMed:8640233 394..509
9aaTAD 3. /evidence=ECO:0000269|PubMed:34342803 460..468
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..509
Blue background indicates that the domain is not in the aligned region.

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