DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HmgD and SOX1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_005977.2 Gene:SOX1 / 6656 HGNCID:11189 Length:391 Species:Homo sapiens


Alignment Length:110 Identity:32/110 - (29%)
Similarity:49/110 - (44%) Gaps:35/110 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW----EAKAAKA---- 59
            |:.|||::|:|:|....|..:.:|||.:..:|::||.|..|:.|.:..:.    |||..:|    
Human    49 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMK 113

  Fly    60 ------------------KDDYDRAVKEFEANGG--SSAANGGGA 84
                              ||.|..|       ||  ::.|.||||
Human   114 EHPDYKYRPRRKTKTLLKKDKYSLA-------GGLLAAGAGGGGA 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 23/89 (26%)
SOX1NP_005977.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 1/2 (50%)
HMG-box_SoxB 49..128 CDD:438790 21/78 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..249
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 342..350
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.