Protein Alignment HmgD and tfam

DIOPT Version :10

• Sequence 1: NP_726109.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_001070857.1
• Gene: tfam / 571106
• ZFINID: ZDB-GENE-061013-552
• Length: 277
• Species: Danio rerio
• Alignment Length: 99
• Identity: 29/99 - (29%)
• Similarity: 59/99 - (59%)
• Gaps: 2/99 - (2%)

  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            |||||:|||.::...:.::.::||.||..:|.::..:.|:.:  :.|..::..:.:||:.|..|:
Zfish    47 PKRPLTAYMTFVKDMQPTVSKQNPSIKSVDVMRKIAQQWKMLTTEQKQPFQVASLEAKEQYKLAL 111

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKE 101
            ::|:|....:.:.....:||.:.||:.|.:.|||
Zfish   112 EKFKAQLTPAESAAFAEEKRQRVAKRKAIRKKKE 145

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_726109.1	HMG-box_SSRP1-like	7..71	CDD:438810	17/65 (26%)
tfam	NP_001070857.1	HMG-box_SF	49..107	CDD:438789	15/57 (26%)
		HMG-box_TFAM_rpt2	132..231	CDD:438803	6/14 (43%)