DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmg20b

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001018387.1 Gene:hmg20b / 553572 ZFINID:ZDB-GENE-030131-4258 Length:301 Species:Danio rerio


Alignment Length:103 Identity:31/103 - (30%)
Similarity:48/103 - (46%) Gaps:18/103 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAV 67
            ||.|::.|:.:||..||.|:..:|.:...|:.||.|..|.  |..||..:..:|.:.|..|.|.:
Zfish    53 PKAPVTGYVRFLNERREHIRALHPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQYAREL 117

  Fly    68 KEFEANGGSSAANGGGAKKRAKP---AKKVAKKSKKEE 102
            :|::             |..|..   ||...|:.|:||
Zfish   118 REYQ-------------KSEAYQITCAKVQDKRIKREE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 21/65 (32%)
hmg20bNP_001018387.1 HMG-box_HMG20B 52..136 CDD:438834 27/95 (28%)

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