DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmgb3b

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001017769.1 Gene:hmgb3b / 550466 ZFINID:ZDB-GENE-050417-290 Length:198 Species:Danio rerio


Alignment Length:112 Identity:39/112 - (34%)
Similarity:60/112 - (53%) Gaps:12/112 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDY--DR 65
            |:||.|.:.|:....|..||.:||.:.:.:|||:.|.:|..:.|  |..:.:.|.|.||.|  |.
Zfish    94 PRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDM 158

  Fly    66 AVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            |....:.:||||:|       :::| |.......:||.|:|||||.:
Zfish   159 AFYRKKGSGGSSSA-------KSEP-KDDDDDDDEEEEDDDDDDEDD 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 23/67 (34%)
hmgb3bNP_001017769.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 92..162 CDD:438795 24/67 (36%)
Blue background indicates that the domain is not in the aligned region.

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