DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Hmgb2l2

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_038948739.1 Gene:Hmgb2l2 / 498388 RGDID:1561694 Length:209 Species:Rattus norvegicus


Alignment Length:115 Identity:43/115 - (37%)
Similarity:68/115 - (59%) Gaps:13/115 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW--RAMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.|:.:..|..||.|:||:.:.:.||:.||:|  ::.|||..:|.||||.|:.|::.:
  Rat    95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDI 159

  Fly    68 KEFEANGGSSAANGG-----GAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            ..:.|.|.|.....|     |:||:.:|      :.::||.:||.:||.|
  Rat   160 AAYRAKGKSEVGKKGPGRPTGSKKKNEP------EDEEEEEEEDGEDEEE 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 26/65 (40%)
Hmgb2l2XP_038948739.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 94..163 CDD:438795 28/67 (42%)
Blue background indicates that the domain is not in the aligned region.

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