DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Hmgb2l1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001316810.1 Gene:Hmgb2l1 / 498072 RGDID:1564519 Length:210 Species:Rattus norvegicus


Alignment Length:115 Identity:44/115 - (38%)
Similarity:69/115 - (60%) Gaps:12/115 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW--RAMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.|:.:..|..||.|:||:.:.:.||:.||:|  ::.|||..:|.||||.|:.|::.:
  Rat    95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDI 159

  Fly    68 KEFEANGGSSAANGG-----GAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            ..:.|.|.|.....|     |:||:.:|     :..::||.:|||:||.|
  Rat   160 AAYRAKGKSEVGKKGPGRPTGSKKKNEP-----EDEEEEEEEEDDEDEEE 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 26/65 (40%)
Hmgb2l1NP_001316810.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 93..163 CDD:438795 28/67 (42%)
Blue background indicates that the domain is not in the aligned region.

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