DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Hmgb1l5

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001417261.1 Gene:Hmgb1l5 / 497907 RGDID:1563668 Length:211 Species:Rattus norvegicus


Alignment Length:110 Identity:42/110 - (38%)
Similarity:64/110 - (58%) Gaps:7/110 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW--RAMKDKSEWEAKAAKAKDDYDRAV 67
            ||.|.||:.|:.:..|..||.|:||:.:.:|.|:.||:|  .|..||..:|..|||.|:.|::.:
  Rat    95 PKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDI 159

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            ..:.|.|...||..|..|     |:|..||.::|:.:||::||.|
  Rat   160 AAYRAKGKPDAAKKGVVK-----AEKSKKKKEEEDDEEDEEDEEE 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 24/65 (37%)
Hmgb1l5NP_001417261.1 None

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