DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmg20a

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001006760.1 Gene:hmg20a / 448440 XenbaseID:XB-GENE-955353 Length:345 Species:Xenopus tropicalis


Alignment Length:108 Identity:23/108 - (21%)
Similarity:53/108 - (49%) Gaps:8/108 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYD 64
            ::.||.||:.|:.::|..||.::.|.|.:...|:.:..|..|..:  .:|..:..:|.|.|:.|.
 Frog    98 NNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDKERYT 162

  Fly    65 RAVKEFEANGG------SSAANGGGAKKRAKPAKKVAKKSKKE 101
            :.:::::....      .:.:...|.::|.:..:.|...::||
 Frog   163 KELQQYQNTDAYQTYSRKAQSRQKGRQQRQEGVRGVPINTEKE 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/65 (25%)
hmg20aNP_001006760.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..124 9/25 (36%)
HMG-box_HMG20A 81..184 CDD:438833 18/85 (21%)
SMC_prok_B <151..>292 CDD:274008 9/55 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..198 2/30 (7%)

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