DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmgb3

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001004888.1 Gene:hmgb3 / 448228 XenbaseID:XB-GENE-1002014 Length:202 Species:Xenopus tropicalis


Alignment Length:110 Identity:43/110 - (39%)
Similarity:65/110 - (59%) Gaps:12/110 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAV 67
            ||||.|.:.|:.:..|..||..||||.:.:|||:.||:|..:.|  |..:..||||.|:.|::.|
 Frog    93 PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEKDV 157

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            .::::.|....|.|         |.|:|:| |:|:.|:||:||.|
 Frog   158 ADYKSKGKFDCAKG---------APKLARK-KEEDEDDDDEDEEE 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 26/65 (40%)
hmgb3NP_001004888.1 HMG-box_HMGB_rpt1 13..76 CDD:438794
HMG-box_HMGB_rpt2 91..161 CDD:438795 28/67 (42%)
Blue background indicates that the domain is not in the aligned region.

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