DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and ssrp1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001184126.1 Gene:ssrp1 / 447983 XenbaseID:XB-GENE-994294 Length:695 Species:Xenopus tropicalis


Alignment Length:103 Identity:51/103 - (49%)
Similarity:75/103 - (72%) Gaps:10/103 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM-KD-KSEWEAKAAKAKDDYDRAV 67
            ||||:||||||||::||.||.|||||.:|:::|:.||:|::| || |.||:.:|.:||.||::|:
 Frog   541 PKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKSMSKDKKEEWDRRAEEAKRDYEKAM 605

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDE 105
            ||:.::..:.|:      |:.|.||  .:|.||.||.|
 Frog   606 KEYNSSTPTEAS------KKEKKAK--GEKKKKAESSE 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 38/65 (58%)
ssrp1NP_001184126.1 POB3 21..471 CDD:227494
HMG-box_SSRP1-like 543..609 CDD:438810 38/65 (58%)
Blue background indicates that the domain is not in the aligned region.

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