Protein Alignment HmgD and hmgb2b

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_001004674.1
• Gene: hmgb2b / 447936
• ZFINID: ZDB-GENE-040912-122
• Length: 214
• Species: Danio rerio
• Alignment Length: 112
• Identity: 44/112 - (39%)
• Similarity: 69/112 - (61%)
• Gaps: 13/112 - (11%)

  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW--RAMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.::.:..|.::|.|:|.:.:.|:||:.||||  ::.||::.:|.||.|.::.|::.|
Zfish    97 PKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEV 161

  Fly    68 KEFEANGGSSAANGGGAKKR--AKPAKKVAKKSKKEESDEDDDDESE 112
            ..:.|        ||||.||  .:|...| |||:.|..|:||:||.|
Zfish   162 AAYRA--------GGGASKRGPGRPTGSV-KKSQAEADDDDDEDEDE 199

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	24/64 (38%)
hmgb2b	NP_001004674.1	HMG_box_2	7..78	CDD:286146
		HMG_box	97..164	CDD:278906	25/66 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	1	1.000	-	-		FOG0000133
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	4.020