Protein Alignment HmgD and SoxN

DIOPT Version :10

• Sequence 1: NP_726109.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Alignment Length: 107
• Identity: 33/107 - (30%)
• Similarity: 46/107 - (42%)
• Gaps: 27/107 - (25%)

  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW-------EAKAAKA 59
            :|:.|||::|:|:|....|..:..:||.:..:|::||.|..|   ||.||.       |||..:|
  Fly   176 ADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQW---KDLSESEKRPFIDEAKRLRA 237

  Fly    60 -----KDDYD----------RAVKEFEANGGSSAAN--GGGA 84
                 ..||.          ...||....||.....  ||||
  Fly   238 VHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGA 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_726109.1	HMG-box_SSRP1-like	7..71	CDD:438810	25/85 (29%)
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	25/77 (32%)