Protein Alignment HmgD and TFAM

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_732527.1
• Gene: TFAM / 42433
• FlyBaseID: FBgn0038805
• Length: 284
• Species: Drosophila melanogaster
• Alignment Length: 112
• Identity: 28/112 - (25%)
• Similarity: 51/112 - (45%)
• Gaps: 12/112 - (10%)

  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW----RAMKDKSEWEAKA-----AKA 59
            :||:||:.|..::...|..:|..||.|...||.::..:.|    ..:|::.:.|.|.     .:.
  Fly    77 RPKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEE 141

  Fly    60 KDDYDRAV-KEFEANGGSSAANGGGAKKRAKPAKKVAK--KSKKEES 103
            :..||..: :|..|.......:...||:|.:..|:|.:  :.||..|
  Fly   142 RTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPAS 188

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	18/72 (25%)
TFAM	NP_732527.1	HMGB-UBF_HMG-box	78..142	CDD:238686	16/63 (25%)
		HMGB-UBF_HMG-box	183..247	CDD:238686	3/6 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR48112
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	3.010