DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and D

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_524066.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster


Alignment Length:86 Identity:24/86 - (27%)
Similarity:42/86 - (48%) Gaps:9/86 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW----EAKAAKA-----KD 61
            |||::|:|:|....|..|.::||.:..:|::||.|..|:.:.:..:.    |||..:|     ..
  Fly   143 KRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHP 207

  Fly    62 DYDRAVKEFEANGGSSAANGG 82
            ||....:....|..::...||
  Fly   208 DYKYRPRRKPKNPLTAGPQGG 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 20/72 (28%)
DNP_524066.1 HMG-box_SoxB 140..219 CDD:438790 21/75 (28%)

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