DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Sox21b

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster


Alignment Length:58 Identity:19/58 - (32%)
Similarity:35/58 - (60%) Gaps:4/58 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW----EAKAAKA 59
            |||::|:|:|....|..|.::||.:..:|::||.|..|:.:.::.:.    |||..:|
  Fly   249 KRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRA 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 18/57 (32%)
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 19/58 (33%)

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