DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and sox17b

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_988849.1 Gene:sox17b / 394440 XenbaseID:XB-GENE-484865 Length:376 Species:Xenopus tropicalis


Alignment Length:99 Identity:22/99 - (22%)
Similarity:49/99 - (49%) Gaps:17/99 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRA--MKDKSEWEAKAAKAKDDYDRAVK 68
            :||::|:|:|....|:.:.::||.:...|::|..|:.|::  :..|..:..:|.:.:..:.:...
 Frog    59 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQHIQDYP 123

  Fly    69 EFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEE 102
            ::              |.|.: .||..|:.|:||
 Frog   124 DY--------------KYRPR-RKKQVKRMKREE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 14/65 (22%)
sox17bNP_988849.1 HMG-box_SoxF_SOX17 52..132 CDD:438850 16/87 (18%)
PABP-1234 <80..250 CDD:130689 16/78 (21%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q9H6I2 326..334
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 327..331
Blue background indicates that the domain is not in the aligned region.

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