DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Ssrp

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster


Alignment Length:125 Identity:63/125 - (50%)
Similarity:80/125 - (64%) Gaps:14/125 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRA 66
            |.||||..:|:|||||..|||||||||||||||:||:|||:|:.:||||:||..|||.|..|...
  Fly   552 SGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDE 616

  Fly    67 VKEF--EANGGSSAANGGGAKKRAK----PAKKV-----AKKSKKEESDED---DDDESE 112
            ::.:  ||.|.|....||.:.|:.|    |:||.     ..|||:..||:|   .|||.:
  Fly   617 MRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKANTSGSGFKSKEYISDDDSTSSDDEKD 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 39/65 (60%)
SsrpNP_523830.2 POB3 20..499 CDD:227494
HMG-box_SSRP1-like 557..621 CDD:438810 39/63 (62%)
Blue background indicates that the domain is not in the aligned region.

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