DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and sox4a

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_998287.1 Gene:sox4a / 336346 ZFINID:ZDB-GENE-030131-8290 Length:363 Species:Danio rerio


Alignment Length:107 Identity:34/107 - (31%)
Similarity:54/107 - (50%) Gaps:15/107 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS------EWEAKAAKAKDDYD 64
            |||::|:|:|....|..|..::|.:...|::||.|:.|:.:||..      |.|....|...||.
Zfish    65 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYP 129

  Fly    65 ----RAVKEFEANGGSSAANGGGAKK-RAKP-AKKVAKKSKK 100
                |..|:.:::.|.:   |..|:: .|.| ||..:|||.|
Zfish   130 DYKYRPRKKVKSSSGKT---GEKAERVSASPGAKSASKKSSK 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 22/73 (30%)
sox4aNP_998287.1 HMG-box_SoxC 63..138 CDD:438838 22/72 (31%)

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