DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmg20a

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001082803.1 Gene:hmg20a / 326908 ZFINID:ZDB-GENE-030131-5107 Length:291 Species:Danio rerio


Alignment Length:102 Identity:26/102 - (25%)
Similarity:49/102 - (48%) Gaps:17/102 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYD 64
            |:.||.||:.|:.::|..||.::.|.|.:...|:.:..|..|..:  .:|..:..:|.|.|:.|.
Zfish    42 SNAPKAPLTGYVRFMNERREQLRAERPDVPFPEITRMLGNEWSKLPADEKQRYLDEADKDKERYM 106

  Fly    65 RAVKEFEANGGSSAANGGGAKKRAKP--AKKVAKKSK 99
            |.:::::             |..|..  ::||.:|.|
Zfish   107 RELEQYQ-------------KTEAYKHFSRKVQEKQK 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 17/65 (26%)
hmg20aNP_001082803.1 HMG-box_HMG20A 25..128 CDD:438833 24/98 (24%)

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