DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and CG32202

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_730354.2 Gene:CG32202 / 326199 FlyBaseID:FBgn0052202 Length:141 Species:Drosophila melanogaster


Alignment Length:94 Identity:25/94 - (26%)
Similarity:44/94 - (46%) Gaps:19/94 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LNSARESIKRENPGIKVTEVAKR----GGELWRAM-------KDKSEWEAKAAKAKDDYDRAVKE 69
            :|..::.::|.|..:   |:.||    .|:.||::       |.|:|.:.:..|.|:  .:|..|
  Fly    35 VNGIKKIVRRRNHDV---ELLKRRLDKHGDDWRSVPMEAPHPKGKTEQKRRGPKPKN--KQAADE 94

  Fly    70 FEANGGSSAANGGGAKKRAKPAKKVAKKS 98
            ..|.|.....|...|:   ||.|:.||::
  Fly    95 TGAPGSEPGPNTPAAR---KPRKQKAKQA 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/65 (25%)
CG32202NP_730354.2 None

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